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Three Runs, Three Days, One Finding: How Iterating on the Benchmark Changed Everything (Except the Answer)
TECH RELEASES Capstone Development Journal | Month 4: Final Benchmark and Defense Preparation Three Runs, Three Days, One Finding: How Iterating on the Benchmark Changed Everything (Except the Answer) Cameron Ashby | March 29, 2026 Series: Capstone Development Journal | Entry 3 of 4 The Goal This is the last month. Defense is in April.…
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Running the Full Benchmark: 50 Proteins, Three Models, One Platform
Author: Cameron Ashby Date: March 1, 2026 Series: Capstone Development Journal Month 3: Benchmark Execution and Statistical Analysis The Goal This month’s objective was straightforward: run all 50 CASP14 target proteins through all three models in FastFold Suite and produce a statistically rigorous comparison. This is the work that everything else has been building toward.…
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FastFold Suite: Building a Multi-Model Protein Prediction Platform
Author: Cameron AshbyDate: January 27, 2026Series: Capstone Development Journal #1 Introduction I’m Cameron Ashby, a graduate student in the MS Computer Science program at Full Sail University with a concentration in Artificial Intelligence. This fall, I’ll be starting the Doctor of Technology program at Purdue University, focusing on AI transparency and computational biology. This blog…
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